STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_1427Putative permease. (322 aa)    
Predicted Functional Partners:
Tbd_1429
Thiol-disulfide isomerase/thioredoxin.
 
  
 0.900
Tbd_1426
Putative arsenite transporter, ACR3 family.
  
  
 0.816
Tbd_1425
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.800
Tbd_1424
Putative Transcriptional Regulator, ArsR family.
  
  
 0.607
Tbd_1072
Conserved hypothetical protein containing twin-arginine translocation pathway signal.
  
  
 0.505
Tbd_1324
Copper-resistance protein CopA.
  
  
 0.505
Tbd_1732
Conserved hypothetical protein.
   
    0.412
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.412
Tbd_1428
Conserved hypothetical protein.
       0.406
Tbd_1423
Putative phosphatase.
       0.405
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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