Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tbd_1540 | Tbd_1541 | Tbd_1540 | Tbd_1541 | TatD-related deoxyribonuclease. | Type IV pilus assembly protein PilZ. | 0.802 |
Tbd_1540 | Tbd_1542 | Tbd_1540 | Tbd_1542 | TatD-related deoxyribonuclease. | DNA polymerase III delta prime subunit. | 0.850 |
Tbd_1540 | Tbd_1545 | Tbd_1540 | Tbd_1545 | TatD-related deoxyribonuclease. | 4-amino-4-deoxychorismate lyase. | 0.866 |
Tbd_1540 | Tbd_1546 | Tbd_1540 | Tbd_1546 | TatD-related deoxyribonuclease. | Anthranilate synthase. | 0.754 |
Tbd_1540 | Tbd_1550 | Tbd_1540 | Tbd_1550 | TatD-related deoxyribonuclease. | Malonyl CoA-acyl carrier protein transacylase. | 0.715 |
Tbd_1540 | acpP | Tbd_1540 | Tbd_1548 | TatD-related deoxyribonuclease. | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.765 |
Tbd_1540 | mltG | Tbd_1540 | Tbd_1544 | TatD-related deoxyribonuclease. | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | 0.961 |
Tbd_1540 | rppH | Tbd_1540 | Tbd_2110 | TatD-related deoxyribonuclease. | Conserved hypothetical protein; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.695 |
Tbd_1540 | rsmA | Tbd_1540 | Tbd_2340 | TatD-related deoxyribonuclease. | Ribosomal RNA 16S rRNA dimethylase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.772 |
Tbd_1540 | tmk | Tbd_1540 | Tbd_1543 | TatD-related deoxyribonuclease. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.908 |
Tbd_1541 | Tbd_1540 | Tbd_1541 | Tbd_1540 | Type IV pilus assembly protein PilZ. | TatD-related deoxyribonuclease. | 0.802 |
Tbd_1541 | Tbd_1542 | Tbd_1541 | Tbd_1542 | Type IV pilus assembly protein PilZ. | DNA polymerase III delta prime subunit. | 0.831 |
Tbd_1541 | Tbd_1545 | Tbd_1541 | Tbd_1545 | Type IV pilus assembly protein PilZ. | 4-amino-4-deoxychorismate lyase. | 0.794 |
Tbd_1541 | Tbd_1546 | Tbd_1541 | Tbd_1546 | Type IV pilus assembly protein PilZ. | Anthranilate synthase. | 0.778 |
Tbd_1541 | acpP | Tbd_1541 | Tbd_1548 | Type IV pilus assembly protein PilZ. | Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.418 |
Tbd_1541 | mltG | Tbd_1541 | Tbd_1544 | Type IV pilus assembly protein PilZ. | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. | 0.794 |
Tbd_1541 | tmk | Tbd_1541 | Tbd_1543 | Type IV pilus assembly protein PilZ. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.794 |
Tbd_1542 | Tbd_1540 | Tbd_1542 | Tbd_1540 | DNA polymerase III delta prime subunit. | TatD-related deoxyribonuclease. | 0.850 |
Tbd_1542 | Tbd_1541 | Tbd_1542 | Tbd_1541 | DNA polymerase III delta prime subunit. | Type IV pilus assembly protein PilZ. | 0.831 |
Tbd_1542 | Tbd_1545 | Tbd_1542 | Tbd_1545 | DNA polymerase III delta prime subunit. | 4-amino-4-deoxychorismate lyase. | 0.812 |
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