Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_1685Hypothetical protein. (665 aa)    
Predicted Functional Partners:
Tbd_1687
Putative type IV secretory pathway VirD4 components.
 
     0.888
Tbd_1686
Putative ATP-dependent exoDNAse (exonuclease V) alpha subunit.
 
     0.881
Tbd_1684
Hypothetical protein.
       0.741
Tbd_0916
Conserved hypothetical protein.
   
   0.611
Tbd_1853
Hypothetical protein.
  
     0.538
Tbd_1688
Hypothetical protein.
       0.523
Tbd_1689
Hypothetical protein.
       0.467
Tbd_1690
Hypothetical protein.
       0.467
Tbd_1683
Hypothetical protein.
       0.453
Tbd_1682
Nuclease (SNase-like).
  
    0.444
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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