STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_1687Putative type IV secretory pathway VirD4 components. (784 aa)    
Predicted Functional Partners:
Tbd_1686
Putative ATP-dependent exoDNAse (exonuclease V) alpha subunit.
 
   
 0.945
Tbd_1685
Hypothetical protein.
 
     0.888
Tbd_1820
TrwC protein.
 
   
 0.784
Tbd_1684
Hypothetical protein.
       0.741
Tbd_1211
HNH nuclease.
   
 
 0.611
Tbd_2684
HNH nuclease.
   
 
 0.611
Tbd_0057
Conserved hypothetical protein.
    
   0.519
Tbd_1666
Peptidoglycan-binding protein LysM.
     
 0.476
Tbd_1688
Hypothetical protein.
       0.467
Tbd_1689
Hypothetical protein.
       0.467
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.