STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_1865Pilus assembly protein. (134 aa)    
Predicted Functional Partners:
Tbd_1863
Hypothetical protein.
 
  
 0.972
Tbd_1861
Hypothetical protein.
 
  
 0.970
Tbd_1864
Pilus assembly protein.
 
  
 0.950
Tbd_1862
Hypothetical protein.
  
  
 0.932
Tbd_0202
Type IV pilus assembly protein PilM.
 
   
 0.815
Tbd_0203
Type IV pilus assembly protein PilN.
 
  
 0.813
Tbd_0204
Type IV pilus assembly membrane transmembrane protein.
 
   
 0.806
Tbd_0206
Type IV pilus assembly protein PilQ.
 
   
 0.798
Tbd_0205
Type IV pilus assembly protein PilP.
  
  
 0.753
Tbd_0013
Peptidoglycan-binding LysM-like protein.
  
     0.713
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.