STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_1900ABC transporter ATPase. (270 aa)    
Predicted Functional Partners:
Tbd_1899
Protein of unknown function DUF140.
 0.998
Tbd_1898
Putative ABC transporter substrate-binding protein.
 
 0.997
Tbd_0980
ABC-type transport system ipermease component.
 
 0.985
Tbd_0247
ABC transport system permease protein.
 
 0.984
Tbd_1896
Putative signal peptide protein.
 
 
 0.958
Tbd_1895
NTP binding protein containing STAS domain.
  
 0.950
Tbd_0249
ABC-type transport system periplasmic component.
  
 0.928
Tbd_0978
ABC-type transport system periplasmic component.
  
 0.928
Tbd_0248
ABC transporter, ATP-binding protein.
  
  
 
0.908
Tbd_1190
ATP-binding ABC transporter protein.
  
  
 
0.902
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.