STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_1927Putative diguanylate cyclase (GGDEF domain). (253 aa)    
Predicted Functional Partners:
Tbd_2670
Metal dependent phosphohydrolase, HD region.
 
  
 0.954
Tbd_0216
Two component Transcriptional regulator, Winged helix family.
 
 
    0.900
Tbd_1061
Putative diguanylate phosphodiesterase (EAL domain) with GAF sensor.
 
  
 0.887
Tbd_1495
Metal dependent phosphohydrolase, HD region.
 
 0.872
Tbd_1191
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation.
 
 
0.699
Tbd_1928
Flagellar biosynthesis switch protein.
  
    0.687
Tbd_1268
Multi-sensor Hybrid Histidine Kinase.
 
 0.626
Tbd_1042
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s).
 
 
0.591
Tbd_0616
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
 
  
0.589
Tbd_0085
Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation.
 
 
0.583
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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