STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_1968Anti-Sigm factor, ChrR. (150 aa)    
Predicted Functional Partners:
Tbd_1967
Conserved hypothetical protein.
       0.737
Tbd_1969
Hypothetical protein.
       0.737
Tbd_1654
Sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.684
Tbd_1836
Sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.684
Tbd_2095
Sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.684
Tbd_1966
Conserved hypothetical protein.
       0.466
Tbd_1970
Putative denitrification protein NorE.
       0.433
Tbd_1971
Hypothetical protein.
       0.433
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.