STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_1978Hypothetical protein. (524 aa)    
Predicted Functional Partners:
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
       0.773
Tbd_1979
Tryptophan repressor binding protein; Belongs to the WrbA family.
       0.773
Tbd_0552
Hypothetical protein.
  
     0.769
Tbd_0256
Hypothetical protein.
  
     0.741
Tbd_1918
Conserved hypothetical protein.
  
     0.735
Tbd_0382
Conserved hypothetical protein.
  
     0.674
Tbd_2550
Twitching motility protein PilI.
  
     0.671
Tbd_1541
Type IV pilus assembly protein PilZ.
  
     0.665
Tbd_2129
Hypothetical protein.
  
     0.611
Tbd_2415
Conserved hypothetical protein.
  
     0.596
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.