Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tbd_1998Oxidoreductase, FAD-binding. (460 aa)    
Predicted Functional Partners:
Tbd_1107
Putative ferredoxin.
 
  
 0.915
Tbd_0044
Glycolate oxidase (iron-sulfur subunit) protein.
  
 0.750
Tbd_1997
Hypothetical protein.
       0.701
Tbd_0325
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.617
Tbd_1995
Putative transmembrane protein.
       0.611
Tbd_1996
Conserved hypothetical protein.
       0.611
Tbd_2767
Glutamate synthase large subunit.
     
 0.457
Tbd_1994
Conserved hypothetical protein.
       0.446
Tbd_1992
Putative protein.
       0.409
Tbd_1993
Putative protein.
       0.409
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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