Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_2001Hypothetical protein. (210 aa)    
Predicted Functional Partners:
Tbd_2005
Probable cp4-like integrase protein; Belongs to the 'phage' integrase family.
 
    0.597
Tbd_2003
Conserved hypothetical protein.
     
 0.579
Tbd_2002
Hypothetical protein.
       0.533
Tbd_2004
Possible Transcriptional Regulator.
       0.526
Tbd_0943
Putative integrase prophage protein; Belongs to the 'phage' integrase family.
  
    0.475
Tbd_2073
Putative integrase prophage protein; Belongs to the 'phage' integrase family.
  
    0.472
Tbd_0978
ABC-type transport system periplasmic component.
  
     0.425
Tbd_2823
Putative phage integrase; Belongs to the 'phage' integrase family.
  
    0.417
Tbd_0611
Protein of unknown function RIO1.
  
     0.410
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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