STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_2129Hypothetical protein. (744 aa)    
Predicted Functional Partners:
xseB
Exonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 
 0.945
Tbd_0552
Hypothetical protein.
  
     0.701
Tbd_2550
Twitching motility protein PilI.
 
     0.686
Tbd_1541
Type IV pilus assembly protein PilZ.
  
     0.677
Tbd_1918
Conserved hypothetical protein.
  
     0.666
Tbd_1929
Conserved hypothetical protein.
  
    0.661
Tbd_2130
A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs.
     
 0.654
Tbd_0382
Conserved hypothetical protein.
  
     0.644
Tbd_1978
Hypothetical protein.
  
     0.611
Tbd_2552
Response regulator receiver domain protein (CheY).
  
    0.601
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.