STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_2139Putative lipopolysaccharide core biosynthesis glycosyl transferase protein. (364 aa)    
Predicted Functional Partners:
Tbd_2138
Phosphomannomutase.
  
  
 0.783
Tbd_2137
Esterase/lipase/thioesterase family active site.
       0.668
Tbd_2136
Conserved hypothetical protein.
 
     0.654
Tbd_2140
Probable magnesium and cobalt transport transmembrane protein.
       0.590
Tbd_0199
Putative glycosyltransferase.
  
  
 0.514
Tbd_0302
Glycosyltransferase.
 
    0.514
Tbd_1801
Undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.514
Tbd_1868
Putative glycosyltransferase.
  
     0.514
Tbd_1173
Alpha amylase, catalytic subdomain.
   
 0.493
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.493
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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