Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tbd_2149Putative lipase. (203 aa)    
Predicted Functional Partners:
Tbd_0686
acyl-CoA thioesterase I precursor.
  
  
 
0.925
Tbd_0684
Conserved hypothetical protein.
 
 
   0.894
Tbd_0685
ABC transporter, ATPase protein.
 
 
   0.855
Tbd_0355
Filamentous haemagglutinin-related protein.
  
 
 0.779
Tbd_2148
Zn-dependent protease, modulator of DNA gyrase.
     
 0.773
Tbd_2150
TRAP transporter, small subunit.
       0.773
Tbd_2151
TRAP dicarboxylate transporter, DctM subunit.
       0.773
Tbd_2146
Conserved hypothetical protein.
       0.546
Tbd_2147
Conserved hypothetical protein; Belongs to the UPF0307 family.
       0.546
Tbd_2152
Peptidyl-prolyl cis-trans isomerase.
     
 0.516
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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