STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_2149Putative lipase. (203 aa)    
Predicted Functional Partners:
Tbd_0686
acyl-CoA thioesterase I precursor.
  
  
 
0.926
Tbd_0684
Conserved hypothetical protein.
 
     0.795
Tbd_2148
Zn-dependent protease, modulator of DNA gyrase.
     
 0.781
Tbd_2150
TRAP transporter, small subunit.
       0.773
Tbd_2151
TRAP dicarboxylate transporter, DctM subunit.
       0.773
Tbd_0355
Filamentous haemagglutinin-related protein.
  
 
 0.745
Tbd_0685
ABC transporter, ATPase protein.
 
     0.703
Tbd_2146
Conserved hypothetical protein.
       0.546
Tbd_2147
Conserved hypothetical protein; Belongs to the UPF0307 family.
       0.546
Tbd_2152
Peptidyl-prolyl cis-trans isomerase.
       0.511
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.