STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_2201Probable transmembrane protein. (420 aa)    
Predicted Functional Partners:
Tbd_0566
Transmembrane proetin, twin-arginine translocation pathway signal.
 
     0.776
Tbd_0565
Conserved hypothetical protein.
 
   
 0.765
Tbd_0563
Probable sulfur oxidation signal protein, twin-arginine translocation pathway; Belongs to the 5'-nucleotidase family.
 
     0.743
Tbd_2117
Conserved hypothetical protein.
 
     0.734
Tbd_1835
Conserved hypothetical protein.
 
   
 0.713
Tbd_0633
Hypothetical protein.
  
     0.675
Tbd_2035
Putative sulfide dehydrogenase flavocytochrome c oxidoreductase.
 
     0.672
Tbd_1650
Rhodanese-like protein.
 
    0.624
Tbd_1837
Conserved hypothetical protein.
 
   
 0.581
Tbd_0918
Sulfur oxidation protein SoxA.
 
  
 0.546
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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