STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_2454Outer membrane protein. (402 aa)    
Predicted Functional Partners:
Tbd_0127
Outer membrane protein.
  
  
 
0.672
tolB
Probable tolB-related transport protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.660
Tbd_0448
Outer membrane protein (porin).
   
 0.654
mscL
Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
 
     0.577
Tbd_2468
Pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
   0.567
Tbd_0794
Putative outer membrane protein; Belongs to the skp family.
  
 
 0.526
Tbd_1251
Outer membrane chemotaxis MotB protein.
  
 
0.445
Tbd_1171
Hypothetical protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.432
Tbd_1666
Peptidoglycan-binding protein LysM.
   
 
 0.424
rpmI
Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
   0.419
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.