STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_2479Putative DsrM protein. (244 aa)    
Predicted Functional Partners:
Tbd_1403
Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.996
Tbd_1404
Nitrate reductase, beta subunit.
  
 0.995
Tbd_1401
Nitrate/proton symporter.
  
 
 0.945
Tbd_1402
Nitrate/nitrite antiporter.
  
 
 0.945
Tbd_2478
Reductase, iron-sulfur binding subunit, putative.
 
 
 0.933
Tbd_2308
Nitrite reductase (NAD(P)H) small subunit.
  
 
 0.931
Tbd_2474
Molybdopterin oxidoreductase, membrane subunit.
 
  
 0.921
Tbd_2309
Nitrite and sulfite reductase iron-sulfur/siroheme-binding site; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.920
Tbd_2272
Nitrate transporter periplasmic component.
     
 0.911
Tbd_2310
Assimilatory nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.903
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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