STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_2613Membrane protein, putative. (361 aa)    
Predicted Functional Partners:
Tbd_2614
Universal stress protein.
   
 0.983
Tbd_0873
Adenylylsulfate reductase, beta subunit.
  
     0.715
Tbd_2612
Hypothetical protein.
       0.701
Tbd_0872
Adenylylsulfate reductase, alpha subunit.
  
     0.672
Tbd_0871
Conserved hypothetical protein.
  
     0.625
Tbd_2616
Sulfate permease, SulP family.
 
  
 0.610
Tbd_1309
Sulfite reductase, dissimilatory-type alpha subunit.
  
     0.567
Tbd_1369
Sulfite reductase, dissimilatory-type alpha subunit.
  
     0.564
Tbd_2485
Sulfite reductase, dissimilatory-type alpha subunit.
  
     0.542
Tbd_2615
Conserved hypothetical protein.
       0.537
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.