STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbd_2727Conserved hypothetical protein. (673 aa)    
Predicted Functional Partners:
Tbd_0759
Protein of unknown function DUF11.
    
 
 0.635
Tbd_0907
Conserved hypothetical protein containing BNR repeat.
    
 
 0.635
Tbd_1291
Conserved hypothetical protein containing twin-arginine translocation pathway signal.
    
 
 0.635
Tbd_2495
Hypothetical protein.
    
 
 0.635
Tbd_2664
Hypothetical protein.
    
 
 0.635
Tbd_2665
Conserved hypothetical protein.
    
 
 0.635
Tbd_2728
Conserved hypothetical protein.
       0.507
Tbd_2726
Probable cytochrome C transmembrane protein.
       0.505
Tbd_1235
Conserved hypothetical protein.
 
 
   0.402
Your Current Organism:
Thiobacillus denitrificans ATCC 25259
NCBI taxonomy Id: 292415
Other names: T. denitrificans ATCC 25259, Thiobacillus denitrificans str. ATCC 25259, Thiobacillus denitrificans strain ATCC 25259
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.