STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerKA2Spore germination protein KA. (567 aa)    
Predicted Functional Partners:
gerKC2
Spore germination protein KC.
  
 0.959
gerKB2
Spore germination protein KB.
 
  
 0.952
gerKC2-2
Spore germination protein KC.
  
 0.822
STH203
Stage V sporulation protein AD.
  
  
 0.804
STH202
Stage V sporulation protein AC.
  
  
 0.796
spoIIR
pro-sigma-E processing factor SpoIIR.
 
    0.791
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.788
STH204
Stage V sporulation protein AE.
  
  
 0.784
gerXB
Spore germination protein.
 
  
 0.778
spoIVB
Stage IV sporulation protein B.
  
     0.775
Your Current Organism:
Symbiobacterium thermophilum
NCBI taxonomy Id: 292459
Other names: S. thermophilum IAM 14863, Symbiobacterium thermophilum IAM 14863, Symbiobacterium thermophilum str. IAM 14863, Symbiobacterium thermophilum strain IAM 14863
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.