Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
STH1418 | aroA | STH1418 | STH1419 | Prephenate dehydrogenase. | 3-phosphoshikimate-1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.986 |
STH1418 | cmk | STH1418 | STH1668 | Prephenate dehydrogenase. | Cytidylate kinase. | 0.932 |
STH1669 | STH1670 | STH1669 | STH1670 | 1-acyl-sn-glycerol-3-phosphate acyltransferase. | 30S ribosomal protein S1. | 0.709 |
STH1669 | cmk | STH1669 | STH1668 | 1-acyl-sn-glycerol-3-phosphate acyltransferase. | Cytidylate kinase. | 0.986 |
STH1670 | STH1669 | STH1670 | STH1669 | 30S ribosomal protein S1. | 1-acyl-sn-glycerol-3-phosphate acyltransferase. | 0.709 |
STH1670 | cmk | STH1670 | STH1668 | 30S ribosomal protein S1. | Cytidylate kinase. | 0.975 |
STH1670 | ndk | STH1670 | STH1694 | 30S ribosomal protein S1. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.556 |
STH1783 | cmk | STH1783 | STH1668 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.944 |
STH1783 | der | STH1783 | STH1679 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.851 |
STH1783 | scpB | STH1783 | STH1802 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.778 |
aroA | STH1418 | STH1419 | STH1418 | 3-phosphoshikimate-1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Prephenate dehydrogenase. | 0.986 |
aroA | cmk | STH1419 | STH1668 | 3-phosphoshikimate-1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Cytidylate kinase. | 0.938 |
cmk | STH1418 | STH1668 | STH1418 | Cytidylate kinase. | Prephenate dehydrogenase. | 0.932 |
cmk | STH1669 | STH1668 | STH1669 | Cytidylate kinase. | 1-acyl-sn-glycerol-3-phosphate acyltransferase. | 0.986 |
cmk | STH1670 | STH1668 | STH1670 | Cytidylate kinase. | 30S ribosomal protein S1. | 0.975 |
cmk | STH1783 | STH1668 | STH1783 | Cytidylate kinase. | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.944 |
cmk | aroA | STH1668 | STH1419 | Cytidylate kinase. | 3-phosphoshikimate-1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.938 |
cmk | der | STH1668 | STH1679 | Cytidylate kinase. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.983 |
cmk | ndk | STH1668 | STH1694 | Cytidylate kinase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.929 |
cmk | scpB | STH1668 | STH1802 | Cytidylate kinase. | Conserved hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.977 |
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