Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STH2005Conserved hypothetical protein. (505 aa)    
Predicted Functional Partners:
STH2006
Two-component sensor histidine kinase.
 
  
 0.723
STH766
Putative transcriptional regulator.
  
     0.697
STH3309
Hypothetical protein.
  
     0.692
STH2007
Two-component response regulator.
     
 0.592
STH1678
Conserved hypothetical protein.
  
     0.588
STH2563
Conserved hypothetical protein.
  
     0.584
STH260
Putative cation transporter.
  
     0.554
STH3245
Conserved hypothetical protein.
  
     0.501
STH3126
Conserved hypothetical protein.
  
     0.494
STH1240
Conserved hypothetical protein.
  
     0.478
Your Current Organism:
Symbiobacterium thermophilum
NCBI taxonomy Id: 292459
Other names: S. thermophilum IAM 14863, Symbiobacterium thermophilum IAM 14863, Symbiobacterium thermophilum str. IAM 14863, Symbiobacterium thermophilum strain IAM 14863
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