Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
STH1673 | STH2428 | STH1673 | STH2428 | Conserved hypothetical protein. | Putative Zn-dependent hydrolase. | 0.900 |
STH2425 | STH2427 | STH2425 | STH2427 | Putative Fe-S oxidoreductase. | MarR family transcriptional regulator. | 0.445 |
STH2425 | STH2428 | STH2425 | STH2428 | Putative Fe-S oxidoreductase. | Putative Zn-dependent hydrolase. | 0.468 |
STH2425 | aspS | STH2425 | STH2421 | Putative Fe-S oxidoreductase. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.506 |
STH2427 | STH2425 | STH2427 | STH2425 | MarR family transcriptional regulator. | Putative Fe-S oxidoreductase. | 0.445 |
STH2427 | STH2428 | STH2427 | STH2428 | MarR family transcriptional regulator. | Putative Zn-dependent hydrolase. | 0.523 |
STH2428 | STH1673 | STH2428 | STH1673 | Putative Zn-dependent hydrolase. | Conserved hypothetical protein. | 0.900 |
STH2428 | STH2425 | STH2428 | STH2425 | Putative Zn-dependent hydrolase. | Putative Fe-S oxidoreductase. | 0.468 |
STH2428 | STH2427 | STH2428 | STH2427 | Putative Zn-dependent hydrolase. | MarR family transcriptional regulator. | 0.523 |
STH2428 | STH2429 | STH2428 | STH2429 | Putative Zn-dependent hydrolase. | Hypothetical protein. | 0.498 |
STH2428 | STH356 | STH2428 | STH356 | Putative Zn-dependent hydrolase. | Putative pyridine nucleotide-disulphide oxidoreductase. | 0.794 |
STH2428 | aspS | STH2428 | STH2421 | Putative Zn-dependent hydrolase. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.464 |
STH2428 | dtd | STH2428 | STH2430 | Putative Zn-dependent hydrolase. | Putative D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the D [...] | 0.505 |
STH2428 | guaA | STH2428 | STH501 | Putative Zn-dependent hydrolase. | GMP synthetase; Catalyzes the synthesis of GMP from XMP. | 0.450 |
STH2428 | secD | STH2428 | STH2443 | Putative Zn-dependent hydrolase. | Protein translocase subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.411 |
STH2428 | secF | STH2428 | STH2442 | Putative Zn-dependent hydrolase. | Protein translocase subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecF subfamily. | 0.442 |
STH2429 | STH2428 | STH2429 | STH2428 | Hypothetical protein. | Putative Zn-dependent hydrolase. | 0.498 |
STH2429 | dtd | STH2429 | STH2430 | Hypothetical protein. | Putative D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the D [...] | 0.533 |
STH356 | STH2428 | STH356 | STH2428 | Putative pyridine nucleotide-disulphide oxidoreductase. | Putative Zn-dependent hydrolase. | 0.794 |
STH356 | guaA | STH356 | STH501 | Putative pyridine nucleotide-disulphide oxidoreductase. | GMP synthetase; Catalyzes the synthesis of GMP from XMP. | 0.428 |
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