Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
STH3167 | STH3293 | STH3167 | STH3293 | Pyruvate flavodoxin dehydrogenase. | Iron hydrogenase. | 0.726 |
STH3167 | STH516 | STH3167 | STH516 | Pyruvate flavodoxin dehydrogenase. | Putative ferredoxin. | 0.977 |
STH3167 | STH902 | STH3167 | STH902 | Pyruvate flavodoxin dehydrogenase. | Membrane-associated lipoprotein involved in thiamine biosynthesis; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. | 0.550 |
STH3167 | rnfA | STH3167 | STH900 | Pyruvate flavodoxin dehydrogenase. | Na+-transporting NADH-quinone reductase subunit 5; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.866 |
STH3167 | rnfB | STH3167 | STH901 | Pyruvate flavodoxin dehydrogenase. | Na+-transporting NADH-quinone reductase subunit 6; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.990 |
STH3167 | rnfC | STH3167 | STH896 | Pyruvate flavodoxin dehydrogenase. | Na+-transporting NADH-quinone reductase subunit 1; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | 0.862 |
STH3167 | rnfD | STH3167 | STH897 | Pyruvate flavodoxin dehydrogenase. | Na+-transporting NADH-quinone reductase subunit 2; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. | 0.862 |
STH3167 | rnfE | STH3167 | STH899 | Pyruvate flavodoxin dehydrogenase. | Na+-transporting NADH-quinone reductase subunit 4; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.862 |
STH3167 | rnfG | STH3167 | STH898 | Pyruvate flavodoxin dehydrogenase. | Na+-transporting NADH-quinone reductase subunit 3; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. | 0.862 |
STH3293 | STH3167 | STH3293 | STH3167 | Iron hydrogenase. | Pyruvate flavodoxin dehydrogenase. | 0.726 |
STH3293 | STH516 | STH3293 | STH516 | Iron hydrogenase. | Putative ferredoxin. | 0.590 |
STH3293 | STH903 | STH3293 | STH903 | Iron hydrogenase. | Conserved domain protein. | 0.404 |
STH3293 | rnfA | STH3293 | STH900 | Iron hydrogenase. | Na+-transporting NADH-quinone reductase subunit 5; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.935 |
STH3293 | rnfB | STH3293 | STH901 | Iron hydrogenase. | Na+-transporting NADH-quinone reductase subunit 6; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.574 |
STH3293 | rnfC | STH3293 | STH896 | Iron hydrogenase. | Na+-transporting NADH-quinone reductase subunit 1; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | 0.961 |
STH3293 | rnfD | STH3293 | STH897 | Iron hydrogenase. | Na+-transporting NADH-quinone reductase subunit 2; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. | 0.897 |
STH3293 | rnfE | STH3293 | STH899 | Iron hydrogenase. | Na+-transporting NADH-quinone reductase subunit 4; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.895 |
STH3293 | rnfG | STH3293 | STH898 | Iron hydrogenase. | Na+-transporting NADH-quinone reductase subunit 3; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. | 0.913 |
STH516 | STH3167 | STH516 | STH3167 | Putative ferredoxin. | Pyruvate flavodoxin dehydrogenase. | 0.977 |
STH516 | STH3293 | STH516 | STH3293 | Putative ferredoxin. | Iron hydrogenase. | 0.590 |
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