STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46105.1PFAM: D-alanyl-D-alanine carboxypeptidase; COGs: COG1876 D-alanyl-D-alanine carboxypeptidase; InterPro IPR003709; KEGG: cyt:cce_3005 carboxypeptidase; PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; SPTR: Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins. (261 aa)    
Predicted Functional Partners:
AFZ46106.1
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mar:MAE_13210 putative glycosyl transferase; PFAM: glycosyl transferase group 1; SPTR: Putative glycosyl transferase.
       0.639
AFZ46104.1
Transposase; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR007087:IPR001959:IPR010095; KEGG: mar:MAE_42620 transposase; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: Transposase; TIGRFAM: transposase, IS605 OrfB family.
       0.493
AFZ46155.1
PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: cyc:PCC7424_2089 peptidase M23; PFAM: Peptidase M23; SPTR: Peptidase M23B.
 
  
 0.470
AFZ46107.1
KEGG: mar:MAE_13220 putative glycosyl transferase; SPTR: Putative glycosyl transferase.
       0.461
AFZ47601.1
Cyanophycin synthetase; PFAM: RimK-like ATP-grasp domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: cyanophycin synthetase; COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterProIPR003135:IPR013221:IPR004101:IPR011761:IPR 011810; KEGG: cyc:PCC7424_0873 cyanophycin synthetase; PFAM: Mur ligase middle domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; cytoplasmic peptidoglycan synthetase domain protein; SPTR: Cyanophycin synthetase; TIGRFAM: cyanophycin synthetase.
     
 0.417
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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