STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46123.1Microcompartments protein; PFAM: BMC domain; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR020808:IPR000249; KEGG: cyh:Cyan8802_1885 microcompartments protein; PFAM: microcompartments protein; SPTR: Microcompartments protein. (102 aa)    
Predicted Functional Partners:
AFZ46208.1
PFAM: Ethanolamine utilisation protein EutN/carboxysome; COGs: COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR004992; KEGG: cyc:PCC7424_1370 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; SPTR: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.
 
 
 
 0.935
AFZ46124.1
Microcompartments protein; PFAM: BMC domain; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR020808:IPR000249; KEGG: syp:SYNPCC7002_A2613 carbon dioxide concentrating mechanism protein; PFAM: microcompartments protein; SPTR: Carbon dioxide concentrating mechanism protein.
 
   
0.620
AFZ46122.1
Cobalamin (vitamin B12) biosynthesis CbiX protein; PFAM: CbiX; COGs: COG2138 conserved hypothetical protein; InterPro IPR007087:IPR002762; KEGG: cyh:Cyan8802_3890 cobalamin (vitamin B12) biosynthesis CbiX protein; PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; SPTR: Cobalamin (Vitamin B12) biosynthesis CbiX protein.
       0.456
AFZ46792.1
Microcompartments protein; PFAM: BMC domain; InterPro IPR000249; KEGG: cyt:cce_3523 hypothetical protein; PFAM: microcompartments protein; SPTR: Putative uncharacterized protein.
 
 
 
 0.408
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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