STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpcSProtein of unknown function CpeS/Ycf58; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. (173 aa)    
Predicted Functional Partners:
AFZ47527.1
PFAM: Phycobilisome Linker polypeptide; CpcD/allophycocyanin linker domain; InterPro IPR001297:IPR008213:IPR016470; KEGG: cyp:PCC8801_4529 phycobilisome linker polypeptide; PFAM: Phycobilisome linker polypeptide; CpcD phycobilisome linker domain protein; SPTR: Phycobilisome linker polypeptide:CpcD phycobilisome linker-like; Belongs to the phycobilisome linker protein family.
 
  
 0.976
cpcT
Protein of unknown function DUF1001; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
   
 0.912
AFZ47528.1
Hypothetical protein; KEGG: ter:Tery_4107 phycoerythrin-associated linker protein; SPTR: Phycoerythrin-associated linker protein.
     
 0.904
pcyA
Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.
  
   
 0.859
AFZ46138.1
Allophycocyanin alpha subunit apoprotein; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: cyc:PCC7424_2634 phycobilisome protein; PFAM: Phycocyanin; SPTR: Phycobilisome protein.
  
   
 0.812
AFZ46823.1
Allophycocyanin alpha-B subunit apoprotein; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: cyt:cce_3571 allophycocyanin-B; PFAM: Phycocyanin; SPTR: Allophycocyanin-B.
  
   
 0.758
AFZ46321.1
Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit; InterPro IPR012128:IPR006247; KEGG: mar:MAE_24450 phycocyanin beta subunit; PFAM: Phycocyanin; SPTR: C-phycocyanin beta chain; TIGRFAM: phycocyanin, beta subunit.
  
   
 0.757
AFZ46137.1
Allophycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: allophycocyanin, beta subunit; InterPro IPR012128:IPR006245; KEGG: mar:MAE_10260 allophycocyanin beta subunit; PFAM: Phycocyanin; SPTR: Allophycocyanin beta subunit; TIGRFAM: allophycocyanin, beta subunit.
  
   
 0.755
AFZ46566.1
Allophycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: allophycocyanin, beta subunit; InterPro IPR012128:IPR006245; KEGG: cyc:PCC7424_2202 allophycocyanin, beta subunit; PFAM: Phycocyanin; SPTR: Allophycocyanin, beta subunit; TIGRFAM: allophycocyanin, beta subunit.
  
   
 0.738
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.737
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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