STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46236.1COGs: COG0312 Zn-dependent protease and their inactivated homologs; KEGG: cyn:Cyan7425_4000 Zn-dependent protease; SPTR: Zn-dependent protease. (449 aa)    
Predicted Functional Partners:
AFZ48177.1
PFAM: Putative modulator of DNA gyrase; COGs: COG0312 Zn-dependent protease and their inactivated homologs; InterPro IPR002510; KEGG: amr:AM1_5160 modulator of DNA gyrase, putative; PFAM: peptidase U62 modulator of DNA gyrase; SPTR: Modulator of DNA gyrase, putative.
 
     0.793
AFZ47223.1
PFAM: Protein of unknown function (DUF3352); KEGG: cyc:PCC7424_0630 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.588
AFZ46518.1
KEGG: syp:SYNPCC7002_A0441 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.525
AFZ48168.1
KEGG: ava:Ava_2463 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.517
AFZ48729.1
KEGG: ana:alr3583 hypothetical protein; SPTR: Alr3583 protein.
  
     0.490
AFZ46237.1
Transposase, IS605 OrfB family; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: cyh:Cyan8802_4240 transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: Putative transposase; TIGRFAM: transposase, IS605 OrfB family.
       0.437
AFZ48510.1
PFAM: CheW-like domain; InterPro IPR002545:IPR010916; KEGG: amr:AM1_3741 hypothetical protein; PFAM: CheW domain protein; SMART: CheW domain protein; SPTR: Putative uncharacterized protein.
  
     0.412
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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