STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46263.1KEGG: cyh:Cyan8802_0874 high intensity light-inducible lhc-like protein; SPTR: Possible high light inducible polypeptide HliC. (46 aa)    
Predicted Functional Partners:
AFZ47539.1
KaiA family protein; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC hexamer pho [...]
  
     0.757
psaK
PFAM: Photosystem I psaG / psaK; TIGRFAM: photosystem I reaction center subunit PsaK; InterPro IPR000549:IPR017492; KEGG: syf:Synpcc7942_0407 photosystem I reaction center subunit X; PFAM: photosystem I psaG/psaK protein; SPTR: Photosystem I reaction center subunit X; TIGRFAM: photosystem I reaction center subunit PsaK.
  
     0.741
AFZ48373.1
KEGG: cyt:cce_2451 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.643
psaK-2
PFAM: Photosystem I psaG / psaK; TIGRFAM: photosystem I reaction center subunit PsaK; InterPro IPR017492:IPR000549; KEGG: cyt:cce_0400 photosystem I reaction center subunit X; PFAM: photosystem I psaG/psaK protein; SPTR: Photosystem I reaction center subunit X; TIGRFAM: photosystem I reaction center subunit PsaK.
  
     0.616
AFZ48611.1
PFAM: Domain of unknown function (DUF1825); InterPro IPR014954; KEGG: cyh:Cyan8802_0615 domain of unknown function DUF1825; PFAM: Domain of unknown function DUF1825; SPTR: Putative uncharacterized protein.
  
     0.607
AFZ46720.1
PFAM: Protein of unknown function (DUF3318); KEGG: cyt:cce_3430 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.606
AFZ47879.1
KEGG: cyc:PCC7424_4510 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.596
AFZ48738.1
KEGG: mar:MAE_22040 CAB/ELIP/HLIP-related protein; SPTR: CAB/ELIP/HLIP-related protein.
  
     0.590
AFZ46723.1
KEGG: cyt:cce_0535 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.557
AFZ46103.1
Protein of unknown function DUF2232, membrane; PFAM: Predicted membrane protein (DUF2232); COGs: COG4241 membrane protein; InterPro IPR018710; KEGG: cyh:Cyan8802_0917 hypothetical protein; PFAM: Protein of unknown function DUF2232, membrane; SPTR: Putative membrane protein.
  
     0.555
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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