STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46351.1Hypothetical protein; PFAM: Gram-negative pili assembly chaperone, N-terminal domain; COGs: COG3121 P pilus assembly protein chaperone PapD; KEGG: syn:slr1668 hypothetical protein; SPTR: Slr1668 protein. (259 aa)    
Predicted Functional Partners:
AFZ46725.1
PFAM: Fimbrial Usher protein; COGs: COG3188 P pilus assembly protein porin PapC; InterPro IPR000015; KEGG: syn:slr0019 hypothetical protein; PFAM: fimbrial biogenesis outer membrane usher protein; SPTR: Slr0019 protein.
 
 
 0.981
AFZ46350.1
KEGG: syn:ssr2786 hypothetical protein; SPTR: Ssr2786 protein.
       0.603
AFZ46352.1
Hypothetical protein; KEGG: ddc:Dd586_1519 flagellar basal-body rod protein FlgF; SPTR: Flagellar basal-body rod protein FlgF.
       0.556
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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