STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46427.1PFAM: Pentapeptide repeats (8 copies); Tetratricopeptide repeat; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646:IPR001440:IPR019734:IPR013026; KEGG: cyc:PCC7424_3807 pentapeptide repeat protein; PFAM: pentapeptide repeat protein; Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein. (260 aa)    
Predicted Functional Partners:
AFZ47982.1
PFAM: Pentapeptide repeats (8 copies); InterPro IPR001646; KEGG: npu:Npun_F4955 pentapeptide repeat-containing protein; PFAM: pentapeptide repeat protein; SPTR: Pentapeptide repeat protein.
  
     0.758
AFZ46770.1
PFAM: Pentapeptide repeats (8 copies); InterPro IPR001646; KEGG: mar:MAE_02140 hypothetical protein; PFAM: pentapeptide repeat protein; SPTR: Genome sequencing data, contig C326.
  
     0.718
AFZ46428.1
PFAM: Protein of unknown function (DUF3146); KEGG: cyh:Cyan8802_1435 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.686
AFZ46426.1
DNA-cytosine methyltransferase; PFAM: HpaII restriction endonuclease; C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm); COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525:IPR019062:IPR018117; KEGG: tdn:Suden_1839 DNA (cytosine-5-)-methyltransferase., type II site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type II, HpaII; C-5 cytosine-specific DNA methylase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA-cytosine methyltransferase.
       0.551
AFZ47443.1
PFAM: Pentapeptide repeats (8 copies); InterPro IPR001646; KEGG: cyc:PCC7424_2954 pentapeptide repeat protein; PFAM: pentapeptide repeat protein; SPTR: Pentapeptide repeat protein.
  
     0.532
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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