STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46522.1PFAM: Glycosyl transferases group 1; InterPro IPR001296; KEGG: cyh:Cyan8802_3512 hypothetical protein; PFAM: glycosyl transferase group 1; SPTR: Putative uncharacterized protein. (369 aa)    
Predicted Functional Partners:
AFZ46521.1
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mar:MAE_24170 hypothetical protein; PFAM: glycosyl transferase group 1; SPTR: Similar to tr|Q8EXK4|Q8EXK4.
       0.664
psbV
Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
  
     0.520
AFZ46523.1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
       0.513
AFZ48085.1
PFAM: Protein of unknown function (DUF2997); KEGG: cyc:PCC7424_0837 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.485
AFZ47314.1
PFAM: Hypothetical chloroplast protein Ycf34; InterPro IPR019656; KEGG: cyc:PCC7424_0185 hypothetical protein; PFAM: Hypothetical chloroplast protein Ycf34; SPTR: Putative uncharacterized protein.
  
     0.407
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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