STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46564.1Peptidase M15D vanX D-ala-D-ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (237 aa)    
Predicted Functional Partners:
AFZ48423.1
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
      0.670
AFZ46565.1
HtrA2 peptidase; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001254:IPR001478:IPR001940; KEGG: cyc:PCC7424_0619 2-alkenal reductase; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: 2-alkenal reductase.
       0.505
AFZ48440.1
TIGRFAM: looped-hinge helix DNA binding domain, AbrB family; InterPro IPR006339; KEGG: ava:Ava_0524 AbrB family transcriptional regulator; SPTR: Similar to tr|P74426|P74426_SYNY3 Sll0359 protein; TIGRFAM: transcriptional regulator, AbrB family.
  
     0.429
AFZ47601.1
Cyanophycin synthetase; PFAM: RimK-like ATP-grasp domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: cyanophycin synthetase; COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterProIPR003135:IPR013221:IPR004101:IPR011761:IPR 011810; KEGG: cyc:PCC7424_0873 cyanophycin synthetase; PFAM: Mur ligase middle domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; cytoplasmic peptidoglycan synthetase domain protein; SPTR: Cyanophycin synthetase; TIGRFAM: cyanophycin synthetase.
     
 0.425
AFZ46566.1
Allophycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: allophycocyanin, beta subunit; InterPro IPR012128:IPR006245; KEGG: cyc:PCC7424_2202 allophycocyanin, beta subunit; PFAM: Phycocyanin; SPTR: Allophycocyanin, beta subunit; TIGRFAM: allophycocyanin, beta subunit.
 
     0.401
ndhO
Component of NDH complex; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.400
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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