STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46640.14-vinyl reductase 4VR; PFAM: V4R domain; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR004096; KEGG: cyp:PCC8801_1056 4-vinyl reductase 4VR; PFAM: 4-vinyl reductase 4VR; SPTR: 4-vinyl reductase 4VR. (224 aa)    
Predicted Functional Partners:
AFZ46639.1
KEGG: cyn:Cyan7425_3171 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.934
AFZ46641.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: cyn:Cyan7425_3169 ferredoxin; PFAM: ferredoxin; SPTR: Ferredoxin.
 
    0.933
AFZ46642.1
KEGG: cyt:cce_2107 hypothetical protein; SPTR: Slr0149 protein.
 
   
 0.930
AFZ46643.1
Tetratricopeptide TPR_1 repeat-containing protein; PFAM: Tetratricopeptide repeat; InterPro IPR019734:IPR013026:IPR001440; KEGG: cyt:cce_2105 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein.
 
     0.774
AFZ46638.1
KEGG: cyt:cce_2111 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.684
AFZ46637.1
4-vinyl reductase 4VR; PFAM: V4R domain; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR004096; KEGG: cyc:PCC7424_1095 4-vinyl reductase 4VR; PFAM: 4-vinyl reductase 4VR; SPTR: 4-vinyl reductase 4VR.
 
    
0.668
AFZ46953.1
KEGG: tel:tlr1669 hypothetical protein; SPTR: Tlr1669 protein.
  
     0.621
AFZ46414.1
PFAM: Radical SAM superfamily; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197:IPR006638:IPR001468; KEGG: npu:Npun_F4794 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein.
  
  
 0.616
AFZ46933.1
PFAM: Radical SAM superfamily; B12 binding domain; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR006158:IPR007197; KEGG: syp:SYNPCC7002_A0327 hypothetical protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein.
  
  
 0.616
AFZ48186.1
Protein of unknown function DUF2344; PFAM: Uncharacterized protein conserved in bacteria (DUF2344); Radical SAM superfamily; TIGRFAM: radical SAM family uncharacterized protein; radical SAM-linked protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197:IPR018768:IPR006638; KEGG: cyc:PCC7424_0387 radical SAM domain protein; PFAM: Protein of unknown function DUF2344; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein.
  
  
 0.616
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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