STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46642.1KEGG: cyt:cce_2107 hypothetical protein; SPTR: Slr0149 protein. (150 aa)    
Predicted Functional Partners:
AFZ46641.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; COGs: COG0633 Ferredoxin; InterPro IPR001041; KEGG: cyn:Cyan7425_3169 ferredoxin; PFAM: ferredoxin; SPTR: Ferredoxin.
 
     0.933
AFZ46640.1
4-vinyl reductase 4VR; PFAM: V4R domain; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR004096; KEGG: cyp:PCC8801_1056 4-vinyl reductase 4VR; PFAM: 4-vinyl reductase 4VR; SPTR: 4-vinyl reductase 4VR.
 
   
 0.930
AFZ46639.1
KEGG: cyn:Cyan7425_3171 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.902
AFZ46643.1
Tetratricopeptide TPR_1 repeat-containing protein; PFAM: Tetratricopeptide repeat; InterPro IPR019734:IPR013026:IPR001440; KEGG: cyt:cce_2105 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein.
 
     0.898
AFZ46637.1
4-vinyl reductase 4VR; PFAM: V4R domain; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR004096; KEGG: cyc:PCC7424_1095 4-vinyl reductase 4VR; PFAM: 4-vinyl reductase 4VR; SPTR: 4-vinyl reductase 4VR.
 
   
 0.881
AFZ46136.1
CpcD phycobilisome linker domain protein; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
   
 
 0.777
AFZ46018.1
PFAM: Phycobilisome protein; Phycobilisome Linker polypeptide; InterPro IPR001297:IPR012128; KEGG: cyt:cce_0920 phycobilisome core-membrane linker polypeptide; PFAM: Phycobilisome linker polypeptide; Phycocyanin; SPTR: Phycobilisome core-membrane linker polypeptide; Belongs to the phycobilisome linker protein family.
    
 
 0.763
AFZ46322.1
Phycocyanin, alpha subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, alpha subunit; InterPro IPR012128:IPR006246; KEGG: cyc:PCC7424_0160 phycocyanin, alpha subunit; PFAM: Phycocyanin; SPTR: C-phycocyanin alpha chain; TIGRFAM: phycocyanin, alpha subunit.
    
 
 0.744
AFZ46321.1
Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit; InterPro IPR012128:IPR006247; KEGG: mar:MAE_24450 phycocyanin beta subunit; PFAM: Phycocyanin; SPTR: C-phycocyanin beta chain; TIGRFAM: phycocyanin, beta subunit.
    
 
 0.740
AFZ47328.1
PFAM: Phycobilisome Linker polypeptide; InterPro IPR016470:IPR001297; KEGG: cyh:Cyan8802_1383 phycobilisome linker polypeptide; PFAM: Phycobilisome linker polypeptide; SPTR: Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
    
 
 0.720
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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