STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46757.1InterPro IPR012899; KEGG: syn:sll0858 hypothetical protein; PFAM: protein of unknown function Spy-related; SPTR: Sll0858 protein. (174 aa)    
Predicted Functional Partners:
AFZ46755.1
RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: cyt:cce_2424 RNA polymerase sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: Group 4 sigma-70 RNA polymerase sigma factor H; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.808
AFZ47837.1
KEGG: cyc:PCC7424_3792 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.722
AFZ46736.1
KEGG: cyc:PCC7424_1779 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.687
AFZ46756.1
KEGG: cyc:PCC7424_3295 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.679
AFZ48182.1
PFAM: Oxygen evolving enhancer protein 3 (PsbQ); TIGRFAM: photosystem II protein PsbQ; InterPro IPR017487; KEGG: mar:MAE_50080 photosystem II extrinsic protein; SPTR: Photosystem II extrinsic protein; TIGRFAM: photosystem II protein PsbQ.
  
     0.663
AFZ47539.1
KaiA family protein; Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonizing the interaction between kaiA and kaiC. A kaiA dimer is sufficient to enhance kaiC hexamer pho [...]
  
     0.638
AFZ46633.1
KEGG: cyh:Cyan8802_4218 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.587
AFZ47014.1
Hypothetical protein; InterPro IPR017964; KEGG: cyt:cce_3625 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.543
AFZ48425.1
KEGG: cyt:cce_0203 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.533
AFZ47542.1
KEGG: cyt:cce_1477 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.528
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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