STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46762.1PFAM: Fatty acid desaturase; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: cyc:PCC7424_2363 fatty acid desaturase; PFAM: fatty acid desaturase; SPTR: Fatty acid desaturase. (294 aa)    
Predicted Functional Partners:
AFZ48421.1
FAD dependent oxidoreductase; COGs: COG0644 Dehydrogenase (flavoprotein); KEGG: mar:MAE_54440 FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase.
   
 
 0.909
AFZ46228.1
UDP-galactopyranose mutase; PFAM: Flavin containing amine oxidoreductase; Rieske [2Fe-2S] domain; COGs: COG3349 conserved hypothetical protein; InterPro IPR005805:IPR000759:IPR017941:IPR002937; KEGG: cyp:PCC8801_0517 amine oxidase; PFAM: amine oxidase; Rieske [2Fe-2S] iron-sulphur domain; SPTR: Amine oxidase.
     
 0.908
AFZ47372.1
Hypothetical protein; COGs: COG0644 Dehydrogenase (flavoprotein); KEGG: cyc:PCC7424_3550 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.905
AFZ46264.1
AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845:IPR000873; KEGG: cyc:PCC7424_1874 beta-ketoacyl synthase; PFAM: AMP-dependent synthetase and ligase; SPTR: Beta-ketoacyl synthase.
  
 
 0.806
AFZ46265.1
Beta-ketoacyl synthase; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; AMP-binding enzyme; Sulfotransferase domain; Beta-ketoacyl synthase, C-terminal domain; COGs: COG3321 Polyketide synthase modules and related protein; InterProIPR000639:IPR009081:IPR006162:IPR018201:IPR 000873:IPR006163:IPR014030:IPR014031:IPR014043:IPR013968:I PR000863:IPR000073; KEGG: cyc:PCC7424_1874 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase; phosphopantetheine-binding; AMP-dependent synthetase and ligase; Acyl transferase; KR do [...]
  
 
 0.806
AFZ48379.1
PFAM: Protein of unknown function (DUF2996); KEGG: cyc:PCC7424_4979 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.763
AFZ46720.1
PFAM: Protein of unknown function (DUF3318); KEGG: cyt:cce_3430 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.746
AFZ47883.1
PFAM: Protein of unknown function (DUF3177); KEGG: cyc:PCC7424_4076 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.708
AFZ47035.1
KEGG: cyh:Cyan8802_4482 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.649
psb27
Photosystem II protein Psb27; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.647
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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