STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46774.1Rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin; COGs: COG1773 Rubredoxin; InterPro IPR004039:IPR018527:IPR001052; KEGG: cyh:Cyan8802_4189 rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; Belongs to the rubredoxin family. (115 aa)    
Predicted Functional Partners:
AFZ46775.1
Ycf48-like protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
 
   
 0.818
AFZ48785.1
PFAM: Flavodoxin; Metallo-beta-lactamase superfamily; Flavin reductase like domain; COGs: COG0426 flavoprotein; InterPro IPR008254:IPR002563:IPR001226; KEGG: cyh:Cyan8802_0834 flavin reductase domain protein FMN-binding; PFAM: flavin reductase domain protein FMN-binding; flavodoxin/nitric oxide synthase; SPTR: Flavin reductase domain protein FMN-binding.
 
  
 0.728
AFZ47234.1
PFAM: Metallo-beta-lactamase superfamily; Flavin reductase like domain; COGs: COG0426 flavoprotein; InterPro IPR008254:IPR002563; KEGG: cyh:Cyan8802_0685 flavin reductase domain protein FMN-binding; PFAM: flavin reductase domain protein FMN-binding; flavodoxin/nitric oxide synthase; SPTR: Flavin reductase domain protein FMN-binding.
 
  
 0.711
AFZ46773.1
KEGG: cyh:Cyan8802_0695 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.617
AFZ48724.1
Ferredoxin thioredoxin reductase beta chain; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin.
  
  
 0.455
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.436
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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