STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46804.1PFAM: Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095; KEGG: ava:Ava_C0036 transposase IS605; PFAM: transposase IS605 OrfB; SPTR: Transposase, IS605 OrfB; TIGRFAM: transposase, IS605 OrfB family. (459 aa)    
Predicted Functional Partners:
AFZ46783.1
KEGG: ana:alr1868 hypothetical protein; SPTR: Alr1868 protein.
  
     0.648
AFZ46107.1
KEGG: mar:MAE_13220 putative glycosyl transferase; SPTR: Putative glycosyl transferase.
  
     0.643
AFZ46803.1
KEGG: cyt:cce_0532 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.576
AFZ46805.1
Hypothetical protein; KEGG: cyc:PCC7424_3143 CopG domain protein DNA-binding domain protein; SPTR: CopG domain protein DNA-binding domain protein.
       0.565
AFZ47874.1
Hypothetical protein; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); KEGG: cyc:PCC7424_2991 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.558
AFZ48283.1
KEGG: cyc:PCC7424_1938 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.554
AFZ46235.1
KEGG: amr:AM1_3911 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.550
AFZ47330.1
KEGG: amr:AM1_3911 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.549
AFZ46802.1
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR020904:IPR002198:IPR002347; KEGG: ter:Tery_3992 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.535
AFZ46989.1
COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: pna:Pnap_4258 superfamily I DNA/RNA helicase; SPTR: Putative uncharacterized protein.
  
     0.506
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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