STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ46834.1Protein of unknown function DUF156; PFAM: Uncharacterised BCR, COG1937; COGs: COG1937 conserved hypothetical protein; InterPro IPR003735; KEGG: cyh:Cyan8802_0446 protein of unknown function DUF156; PFAM: protein of unknown function DUF156; SPTR: Putative uncharacterized protein. (130 aa)    
Predicted Functional Partners:
AFZ48450.1
PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; COGs: COG1062 Zn-dependent alcohol dehydrogenase class III; InterPro IPR013154:IPR013149:IPR002328:IPR014183; KEGG: syp:SYNPCC7002_A0868 alcohol dehydrogenase, zinc-binding dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: Alcohol dehydrogenase, zinc-binding dehydrogenase family protein; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/clas [...]
  
  
 0.758
AFZ46528.1
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterProIPR007627:IPR007624:IPR007630:IPR000943:IPR 014284; KEGG: cyc:PCC7424_4930 RNA polymerase sigma factor SigF; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
    
   0.574
AFZ47243.1
Hypothetical protein; PFAM: Heavy-metal-associated domain; InterPro IPR006121; KEGG: syp:SYNPCC7002_A0081 copper-binding metallochaperone; SPTR: Heavy metal transport/detoxification protein.
 
  
 0.536
AFZ46833.1
KEGG: syp:SYNPCC7002_A0913 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.529
AFZ47793.1
KEGG: cyc:PCC7424_0174 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.458
AFZ46835.1
RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504; KEGG: npu:Npun_F0962 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein; SPTR: RNA-binding region protein.
       0.450
AFZ46705.1
PFAM: R3H domain; COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: cyc:PCC7424_0893 single-stranded nucleic acid binding R3H domain protein; PFAM: single-stranded nucleic acid binding R3H domain-containing protein; SMART: single-stranded nucleic acid binding R3H domain-containing protein; SPTR: Single-stranded nucleic acid binding R3H domain protein.
  
     0.411
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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