rpmB protein (Cyanobacterium stanieri) - STRING interaction network

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rpmB

LSU ribosomal protein L28P; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: syn:ssr1604 50S ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (81 aa)

Predicted Functional Partners:

rplU

0.997

rpsT

0.997

rpsO

0.997

rpmG

0.997

rpsN

0.997

rpmF

0.997

rplM

0.997

rpmA

0.996

rpmH

0.996

rpsD

0.996

Your Current Organism:

Cyanobacterium stanieri

NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplU	Cyast_2170	Cyast_0109	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplM	rpmA	Cyast_2170	Cyast_0108	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; COGs: COG0211 Ribosomal protein L27; InterPro IPR001684:IPR018261; KEGG: cyh:Cyan8802_2772 ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.997
rplM	rpmB	Cyast_2170	Cyast_0963	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L28P; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: syn:ssr1604 50S ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.997
rplM	rpmF	Cyast_2170	Cyast_1709	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; InterPro IPR002677; KEGG: syf:Synpcc7942_0997 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.996
rplM	rpmG	Cyast_2170	Cyast_1053	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; InterPro IPR001705:IPR018264; KEGG: cyc:PCC7424_3097 50S ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.996
rplM	rpmH	Cyast_2170	Cyast_0728	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; InterPro IPR000271; KEGG: syn:smr0011 50S ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.995
rplM	rpsD	Cyast_2170	Cyast_0968	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.997
rplM	rpsN	Cyast_2170	Cyast_1196	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.997
rplM	rpsO	Cyast_2170	Cyast_0869	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998
rplM	rpsT	Cyast_2170	Cyast_0628	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.996
rplU	rplM	Cyast_0109	Cyast_2170	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.997
rplU	rpmA	Cyast_0109	Cyast_0108	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; COGs: COG0211 Ribosomal protein L27; InterPro IPR001684:IPR018261; KEGG: cyh:Cyan8802_2772 ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplU	rpmB	Cyast_0109	Cyast_0963	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L28P; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: syn:ssr1604 50S ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.997
rplU	rpmF	Cyast_0109	Cyast_1709	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; InterPro IPR002677; KEGG: syf:Synpcc7942_0997 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.996
rplU	rpmG	Cyast_0109	Cyast_1053	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; InterPro IPR001705:IPR018264; KEGG: cyc:PCC7424_3097 50S ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.996
rplU	rpmH	Cyast_0109	Cyast_0728	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; InterPro IPR000271; KEGG: syn:smr0011 50S ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.996
rplU	rpsD	Cyast_0109	Cyast_0968	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.997
rplU	rpsN	Cyast_0109	Cyast_1196	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.996
rplU	rpsO	Cyast_0109	Cyast_0869	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.995
rplU	rpsT	Cyast_0109	Cyast_0628	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.996

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