STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47077.1KEGG: npu:Npun_R6070 hypothetical protein; SPTR: Putative uncharacterized protein. (228 aa)    
Predicted Functional Partners:
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
     
 0.814
AFZ46387.1
PFAM: Dihaem cytochrome c; InterPro IPR018588; KEGG: mar:MAE_41770 hypothetical protein; PFAM: Dihaem cytochrome c; SPTR: Putative uncharacterized protein.
  
     0.774
AFZ46442.1
KEGG: cyt:cce_2662 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.681
AFZ47278.1
KEGG: cyt:cce_3936 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.657
AFZ48251.1
KEGG: cyt:cce_1563 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.654
AFZ47071.1
KEGG: mar:MAE_44570 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.586
AFZ46463.1
PFAM: Adenosine/AMP deaminase; TIGRFAM: adenosine deaminase; COGs: COG1816 Adenosine deaminase; InterPro IPR001365; KEGG: cyc:PCC7424_3819 adenosine/AMP deaminase; PFAM: adenosine/AMP deaminase; SPTR: Adenosine/AMP deaminase.
  
     0.574
AFZ46669.1
Protein of unknown function DUF107; PFAM: NfeD-like; COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: cyc:PCC7424_2246 protein of unknown function DUF107; PFAM: protein of unknown function DUF107; SPTR: Putative uncharacterized protein.
  
     0.573
AFZ46769.1
PFAM: Protein of unknown function (DUF3370); KEGG: mar:MAE_04620 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.563
AFZ46472.1
KEGG: cyt:cce_4744 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.552
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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