STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47080.1KEGG: cyn:Cyan7425_2845 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated. (93 aa)    
Predicted Functional Partners:
AFZ47144.1
Hypothetical protein; KEGG: cyn:Cyan7425_2961 methyl-accepting chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis sensory transducer.
  
     0.563
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.497
AFZ47081.1
PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase; COGs: COG0015 Adenylosuccinate lyase; InterProIPR004769:IPR020557:IPR000362:IPR003031:IPR 019468; KEGG: syn:sll0421 adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; SPTR: Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.484
AFZ48094.1
Hypothetical protein; InterPro IPR022272; KEGG: ana:all2511 hypothetical protein; SPTR: All2511 protein.
  
     0.455
AFZ47801.1
Hypothetical protein; InterPro IPR020336; KEGG: npu:Npun_R0316 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.449
AFZ48619.1
KEGG: ter:Tery_0603 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.422
AFZ48701.1
Protein of unknown function DUF2191; PFAM: Uncharacterized protein conserved in bacteria (DUF2191); InterPro IPR019239; KEGG: gvi:gsl2900 hypothetical protein; PFAM: Protein of unknown function DUF2191; SPTR: Gsl2900 protein.
  
     0.412
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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