STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47221.1HerA-ATP synthase, barrel domain protein; PFAM: HAS barrel domain; Domain of unknown function DUF87; COGs: COG0433 ATPase; InterPro IPR018538; KEGG: cyh:Cyan8802_3692 protein of unknown function DUF87; PFAM: HerA-ATP synthase, barrel domain; SPTR: Putative uncharacterized protein. (564 aa)    
Predicted Functional Partners:
AFZ46882.1
PFAM: NurA domain; InterPro IPR018977; KEGG: cyc:PCC7424_0557 hypothetical protein; PFAM: NurA domain; SPTR: Putative uncharacterized protein.
 
 
 
 0.946
AFZ47522.1
HerA-ATP synthase, barrel domain protein; PFAM: HAS barrel domain; InterPro IPR018538; KEGG: cyh:Cyan8802_2257 hypothetical protein; PFAM: HerA-ATP synthase, barrel domain; SPTR: Putative uncharacterized protein.
 
     0.792
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.781
AFZ47972.1
SMC domain protein; TIGRFAM: exonuclease SbcC; COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: cyc:PCC7424_4561 exonuclease SbcC; PFAM: SMC domain protein; SPTR: Exonuclease SbcC.
 
     0.778
AFZ47225.1
KEGG: cyh:Cyan8802_1791 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.569
AFZ48523.1
Single-stranded nucleic acid binding R3H domain-containing protein; PFAM: ATPase family associated with various cellular activities (AAA); R3H domain; COGs: COG3854 conserved hypothetical protein; InterPro IPR003593:IPR001374; KEGG: cyh:Cyan8802_1230 single-stranded nucleic acid binding R3H domain protein; PFAM: single-stranded nucleic acid binding R3H domain-containing protein; SMART: single-stranded nucleic acid binding R3H domain-containing protein; AAA ATPase; SPTR: Single-stranded nucleic acid binding R3H domain protein.
  
     0.541
AFZ46500.1
KEGG: cyc:PCC7424_0760 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.504
AFZ47219.1
KEGG: syp:SYNPCC7002_A2825 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.451
AFZ47220.1
KEGG: mar:MAE_51010 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.451
AFZ47222.1
PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; TIGRFAM: intein N-terminal splicing region; DNA-directed DNA polymerase III (polc); COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR003141:IPR003587:IPR004805:IPR006141:IPR 004013:IPR011708; KEGG: cyh:Cyan8802_3682 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; Hedgehog/intein hint domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit.
       0.422
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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