STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47297.1KEGG: cyh:Cyan8802_4210 type II and III secretion system protein; SPTR: Type II and III secretion system protein. (249 aa)    
Predicted Functional Partners:
AFZ47298.1
PFAM: Fimbrial assembly protein (PilN); COGs: COG3166 Tfp pilus assembly protein PilN; InterPro IPR007813; KEGG: cyh:Cyan8802_4211 fimbrial assembly family protein; PFAM: Fimbrial assembly family protein; SPTR: Fimbrial assembly family protein.
 
 
 0.996
AFZ47299.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM; COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: mar:MAE_09710 type IV pilus assembly protein; SPTR: Type IV pilus assembly protein; TIGRFAM: type IV pilus assembly protein PilM.
 
 
 0.951
AFZ47296.1
PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; COGs: COG4796 Type II secretory pathway component HofQ; InterPro IPR005644:IPR004846; KEGG: cyc:PCC7424_3285 type II and III secretion system protein; PFAM: type II and III secretion system protein; NolW domain protein; SPTR: Type II and III secretion system protein.
 
 
 0.948
AFZ47706.1
CheA signal transduction histidine kinase; PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; Signal transducing histidine kinase, homodimeric domain; Hpt domain; COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR004358:IPR008207:IPR004105:IPR003594:IPR 002545:IPR001789:IPR005467; KEGG: cyc:PCC7424_2780 CheA signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; C [...]
  
  
 0.786
AFZ48771.1
Hypothetical protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR012902:IPR001120; KEGG: syn:slr1929 hypothetical protein; SPTR: Slr1929 protein.
 
  
 0.784
AFZ47467.1
Hypothetical protein; KEGG: cyh:Cyan8802_0343 putative transmembrane anti-sigma factor; SPTR: Putative transmembrane anti-sigma factor.
  
     0.764
AFZ48709.1
PFAM: Family of unknown function (DUF490); InterPro IPR007452; KEGG: cyc:PCC7424_2994 protein of unknown function DUF490; PFAM: protein of unknown function DUF490; SPTR: Putative uncharacterized protein.
  
     0.760
AFZ47674.1
PFAM: Domain of Unknown Function (DUF748); Family of unknown function (DUF490); InterPro IPR007452; KEGG: cyh:Cyan8802_4502 protein of unknown function DUF490; PFAM: protein of unknown function DUF490; SPTR: Putative uncharacterized protein.
  
     0.753
AFZ47954.1
KEGG: cyc:PCC7424_5184 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.749
AFZ46984.1
PFAM: Bacterial type II secretion system protein F domain; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR001992:IPR003004:IPR018076; KEGG: cyh:Cyan8802_1638 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein.
   
 
 0.747
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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