STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47337.1CAB/ELIP/HLIP family protein; PFAM: Chlorophyll A-B binding protein; KEGG: cyt:cce_4826 CAB/ELIP/HLIP family protein; SPTR: Probable CAB/ELIP/HLIP family protein. (72 aa)    
Predicted Functional Partners:
AFZ46540.1
PFAM: Protein of function (DUF2518); InterPro IPR019664; KEGG: cyt:cce_3967 hypothetical protein; PFAM: Protein of unknown function DUF2518; SPTR: Putative uncharacterized protein.
  
     0.689
AFZ46578.1
PFAM: Cytochrome c; InterPro IPR003088:IPR009056; KEGG: cyt:cce_3264 cytochrome cM; PFAM: cytochrome c class I; SPTR: Cytochrome cM.
  
     0.608
AFZ46186.1
PFAM: CO2 hydration protein (ChpXY); TIGRFAM: CO2 hydration protein; InterPro IPR010220; KEGG: cyt:cce_0605 protein involved in constitutive low affinity CO2 uptake; PFAM: CO2 hydration family protein; SPTR: Putative uncharacterized protein; TIGRFAM: CO2 hydration protein.
  
     0.576
AFZ48611.1
PFAM: Domain of unknown function (DUF1825); InterPro IPR014954; KEGG: cyh:Cyan8802_0615 domain of unknown function DUF1825; PFAM: Domain of unknown function DUF1825; SPTR: Putative uncharacterized protein.
  
     0.562
AFZ47720.1
KEGG: syp:SYNPCC7002_A2645 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.530
AFZ47523.1
PFAM: Protein of unknown function (DUF2555); InterPro IPR019678; KEGG: cyt:cce_2060 hypothetical protein; PFAM: Protein of unknown function DUF2555; SPTR: Putative uncharacterized protein; manually curated.
  
     0.524
ndhO
Component of NDH complex; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.522
AFZ46467.1
KEGG: cyp:PCC8801_0878 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.518
AFZ46720.1
PFAM: Protein of unknown function (DUF3318); KEGG: cyt:cce_3430 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.496
petN
PetN family protein; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.
       0.491
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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