STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47369.1PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; COGs: COG0316 conserved hypothetical protein; InterPro IPR016092:IPR000361:IPR017870; KEGG: ava:Ava_1291 HesB/YadR/YfhF; PFAM: HesB/YadR/YfhF-family protein; SPTR: HesB/YadR/YfhF; TIGRFAM: iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family. (111 aa)    
Predicted Functional Partners:
AFZ47370.1
PFAM: Mannose-6-phosphate isomerase; COGs: COG0662 Mannose-6-phosphate isomerase; InterPro IPR001538; KEGG: cyu:UCYN_02530 mannose-6-phosphate isomerase, type 2; PFAM: mannose-6-phosphate isomerase type II; PRIAM: Mannose-6-phosphate isomerase; SPTR: Mannose-6-phosphate isomerase, type 2.
       0.795
AFZ47308.1
HEAT domain containing protein; PFAM: PBS lyase HEAT-like repeat; COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155:IPR000357; KEGG: syn:slr1098 hypothetical protein; PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; SPTR: Slr1098 protein.
    
 
 0.719
AFZ46454.1
PFAM: NifU-like domain; COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: syp:SYNPCC7002_A1413 NifU like protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: Nitrogen-fixing NifU domain protein.
  
 
 0.601
AFZ47999.1
PFAM: Tellurite resistance protein TerB; KEGG: cyt:cce_0541 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
 
 0.590
AFZ46765.1
Glutaredoxin-like protein; PFAM: Glutaredoxin; TIGRFAM: monothiol glutaredoxin, Grx4 family; COGs: COG0278 Glutaredoxin-related protein; InterPro IPR002109:IPR004480:IPR014434; KEGG: glutaredoxin-like protein; PFAM: glutaredoxin; SPTR: Glutaredoxin-like protein; TIGRFAM: glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.582
AFZ47569.1
Cysteine desulfurase; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192:IPR016454:IPR020578; KEGG: cyh:Cyan8802_1092 cysteine desulfurase; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.532
lexA
SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
     
 0.497
AFZ47592.1
Folate-binding protein YgfZ; PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: folate-binding protein YgfZ; COGs: COG0354 aminomethyltransferase related to GcvT; InterPro IPR006222:IPR013977:IPR017703; KEGG: cyh:Cyan8802_0061 folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; SPTR: Glycine cleavage T-protein (Aminomethyl transferase); TIGRFAM: folate-binding protein YgfZ; Belongs to the GcvT family.
 
 
 0.478
AFZ46182.1
Cysteine desulfurase; PFAM: Aminotransferase class-V; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR016454:IPR020578:IPR000192; KEGG: cyp:PCC8801_4043 aminotransferase class V; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: Aminotransferase class V; manually curated.
  
  
 0.468
AFZ48534.1
Cysteine desulfurase; PFAM: Aminotransferase class-V; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR016454:IPR000192; KEGG: cyt:cce_5234 aminotransferase, class V; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: Aminotransferase, class V.
  
  
 0.468
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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