STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47398.1PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; InterPro IPR001119:IPR007049; KEGG: syn:slr1908 hypothetical protein; PFAM: Carbohydrate-selective porin OprB; S-layer domain-containing protein; SPTR: Carbohydrate-selective porin, OprB family; TC 1.B.23; Belongs to the OprB family. (504 aa)    
Predicted Functional Partners:
AFZ47189.1
Resolvase RNase H domain protein fold protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.767
AFZ47503.1
PFAM: Protein of unknown function (DUF3084); COGs: COG4372 Uncharacterized protein with the myosin-like domain; KEGG: cyh:Cyan8802_2083 uncharacterized protein with the myosin-like domain; SPTR: Putative uncharacterized protein.
  
     0.751
AFZ48271.1
PFAM: Predicted permease YjgP/YjgQ family; COGs: COG0795 permease; InterPro IPR005495; KEGG: cyt:cce_2027 putative permease YjgP/YjgQ; PFAM: permease YjgP/YjgQ family protein; SPTR: Putative permease YjgP/YjgQ.
  
     0.739
AFZ47872.1
PFAM: Predicted permease YjgP/YjgQ family; COGs: COG0795 permease; InterPro IPR005495; KEGG: cyh:Cyan8802_0135 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein.
  
     0.727
AFZ48440.1
TIGRFAM: looped-hinge helix DNA binding domain, AbrB family; InterPro IPR006339; KEGG: ava:Ava_0524 AbrB family transcriptional regulator; SPTR: Similar to tr|P74426|P74426_SYNY3 Sll0359 protein; TIGRFAM: transcriptional regulator, AbrB family.
  
    0.719
AFZ48588.1
PFAM: Surface antigen variable number repeat; POTRA domain, ShlB-type; Surface antigen; TIGRFAM: chloroplast envelope protein translocase, IAP75 family; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184:IPR008162; KEGG: cyc:PCC7424_2608 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Surface antigen (D15).
  
   
 0.706
AFZ48631.1
KEGG: cyc:PCC7424_3505 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.704
AFZ47625.1
TIGRFAM: conserved hypothetical protein; COGs: COG4370 conserved hypothetical protein; InterPro IPR019994; KEGG: cyp:PCC8801_0291 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein.
  
     0.703
AFZ47442.1
PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: syn:slr1270 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: Slr1270 protein.
  
   
 0.674
AFZ46866.1
Protein of unknown function DUF177; PFAM: Uncharacterized ACR, COG1399; COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: cyc:PCC7424_0963 protein of unknown function DUF177; PFAM: protein of unknown function DUF177; SPTR: Putative uncharacterized protein; manually curated.
  
     0.672
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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