STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47414.1PFAM: FAD binding domain of DNA photolyase; Deoxyribodipyrimidine photo-lyase-related protein; COGs: COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase; InterPro IPR007357:IPR005101; KEGG: cyc:PCC7424_4487 deoxyribodipyrimidine photolyase-related protein; PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; SPTR: Deoxyribodipyrimidine photolyase-related protein. (519 aa)    
Predicted Functional Partners:
AFZ46035.1
PFAM: Protein of unknown function (DUF2805); TIGRFAM: TIGR03643 family protein; InterPro IPR019882; KEGG: npu:Npun_F5374 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.629
AFZ47987.1
Amine oxidase; PFAM: Flavin containing amine oxidoreductase; COGs: COG3380 NAD/FAD-dependent oxidoreductase; InterPro IPR002937; KEGG: ftn:FTN_1621 NAD/FAD-dependent oxidoreductase; PFAM: amine oxidase; SPTR: Putative uncharacterized protein.
 
     0.629
AFZ48192.1
Deoxyribodipyrimidine photo-lyase type I; PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: deoxyribodipyrimidine photo-lyase, 8-HDF type; COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR018394:IPR006050:IPR005101:IPR002081; KEGG: cyt:cce_2428 DNA photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; PRIAM: Deoxyribodipyrimidine photo-lyase; SPTR: Deoxyribodipyrimidine photolyase.
 
   
 0.579
AFZ47259.1
Deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific); PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: cryptochrome, DASH family; COGs: COG0415 Deoxyribodipyrimidine photolyase; InterProIPR002081:IPR014133:IPR006050:IPR005101:IPR 018394; KEGG: mar:MAE_32950 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; PRIAM: Deoxyribodipyrimidine photo-lyase; SPTR: Similar to tr|Q4BVE9|Q4BVE9_CROWT Deoxyribodipyrimidine photolyase; TIGRFAM: cryptochrome, DASH family.
 
   
 0.523
AFZ47413.1
PFAM: CBS domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000644:IPR003018:IPR000014:IPR001610:IPR 003661:IPR003594:IPR001789:IPR004358:IPR013767:IPR016132:I PR005467:IPR000700; KEGG: ava:Ava_1029 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; CBS domain containing protein; PAS fold domain pro [...]
     
 0.458
AFZ47608.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2256); InterPro IPR017136; KEGG: cyc:PCC7424_3546 hypothetical protein; PFAM: Uncharacterised conserved protein UCP037205; SPTR: Putative uncharacterized protein; manually curated.
 
     0.431
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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