STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ47608.1PFAM: Uncharacterized protein conserved in bacteria (DUF2256); InterPro IPR017136; KEGG: cyc:PCC7424_3546 hypothetical protein; PFAM: Uncharacterised conserved protein UCP037205; SPTR: Putative uncharacterized protein; manually curated. (49 aa)    
Predicted Functional Partners:
AFZ47609.1
Translation factor SUA5; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; COGs: COG0009 Putative translation factor (SUA5); InterPro IPR006070:IPR004388; KEGG: cyc:PCC7424_1475 SUA5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family.
       0.701
AFZ47610.1
PFAM: Protein of unknown function DUF111; TIGRFAM: TIGR00299 family protein; COGs: COG1641 conserved hypothetical protein; InterPro IPR002822; KEGG: mar:MAE_11470 hypothetical protein; PFAM: protein of unknown function DUF111; SPTR: Putative uncharacterized protein; Belongs to the LarC family.
       0.506
AFZ47611.1
PFAM: Phosphoglycerate mutase family; COGs: COG0406 Fructose-2 6-bisphosphatase; InterPro IPR013078; KEGG: cyh:Cyan8802_0265 phosphoglycerate mutase; PFAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase.
       0.506
AFZ47414.1
PFAM: FAD binding domain of DNA photolyase; Deoxyribodipyrimidine photo-lyase-related protein; COGs: COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase; InterPro IPR007357:IPR005101; KEGG: cyc:PCC7424_4487 deoxyribodipyrimidine photolyase-related protein; PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; SPTR: Deoxyribodipyrimidine photolyase-related protein.
 
     0.431
Your Current Organism:
Cyanobacterium stanieri
NCBI taxonomy Id: 292563
Other names: C. stanieri PCC 7202, Cyanobacterium stanieri PCC 7202, Synechococcus cedrorum CCAP 14792a (no longer available), Synechococcus cedrorum CCAP 14792b (no longer available), Synechococcus cedrorum M137/1a, Synechococcus cedrorum SAG 88.79, Synechococcus sp. ATCC 29140, Synechococcus sp. PCC 7202
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